A curated catalogue of human genomic structural variation




Variant Details

Variant: esv24781



Internal ID11042014
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr16:172084..177515hg38UCSC Ensembl
Innerchr16:222083..227514hg19UCSC Ensembl
Innerchr16:162083..167514hg18UCSC Ensembl
Cytoband16p13.3
Allele length
AssemblyAllele length
hg385432
hg195432
hg185432
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv13572, esv12465, esv15758
SamplesNA18511, NA19257, NA19190, NA19129, NA18909, NA19240
Known GenesHBA1, HBA2
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv24781
Frequency
Sample Size40
Observed Gain0
Observed Loss6
Observed Complex0
Frequencyn/a


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