A curated catalogue of human genomic structural variation




Variant Details

Variant: esv24769



Internal ID11042002
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr7:16132171..16134350hg38UCSC Ensembl
Innerchr7:16171796..16173975hg19UCSC Ensembl
Innerchr7:16138321..16140500hg18UCSC Ensembl
Cytoband7p21.1
Allele length
AssemblyAllele length
hg382180
hg192180
hg182180
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv12269
SamplesNA18502, NA18861, NA18508, NA11931, NA19190, NA18916, NA11993, NA12878, NA19114, NA11894, NA12239, NA19225, NA06985, NA18858, NA18909, NA19147, NA19240
Known GenesISPD
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv24769
Frequency
Sample Size40
Observed Gain14
Observed Loss3
Observed Complex0
Frequencyn/a


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