A curated catalogue of human genomic structural variation




Variant Details

Variant: esv24652



Internal ID4355553
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:154549601..154555398hg38UCSC Ensembl
InnerchrX:153777816..153783613hg19UCSC Ensembl
InnerchrX:153431010..153436807hg18UCSC Ensembl
CytobandXq28
Allele length
AssemblyAllele length
hg385798
hg195798
hg185798
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv10020
SamplesNA12878
Known GenesIKBKG
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv24652
Frequency
Sample Size40
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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