A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2464339



Internal ID8527897
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr5:10755348..10756847hg38UCSC Ensembl
Outerchr5:10755460..10756959hg19UCSC Ensembl
Outerchr5:10808460..10809959hg18UCSC Ensembl
Cytoband5p15.2
Allele length
AssemblyAllele length
hg381500
hg191500
hg181500
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv5203858
SamplesNA18507
Known GenesDAP
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)esv2464339
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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