A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2461915



Internal ID8178787
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr11:16214774..16216172hg38UCSC Ensembl
Outerchr11:16236320..16237718hg19UCSC Ensembl
Outerchr11:16192896..16194294hg18UCSC Ensembl
Cytoband11p15.1
Allele length
AssemblyAllele length
hg381399
hg191399
hg181399
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv5242225
SamplesNA18507
Known GenesSOX6
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)esv2461915
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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