A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2458162



Internal ID8175034
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr6:111902795..111909432hg38UCSC Ensembl
Outerchr6:112223998..112230635hg19UCSC Ensembl
Outerchr6:112330691..112337328hg18UCSC Ensembl
Cytoband6q21
Allele length
AssemblyAllele length
hg386638
hg196638
hg186638
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv5361940
SamplesNA18507
Known Genes
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)esv2458162
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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