A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2451224



Internal ID8168096
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:25270160..25332671hg38UCSC Ensembl
Innerchr1:25596651..25659162hg19UCSC Ensembl
Innerchr1:25469238..25531749hg18UCSC Ensembl
Cytoband1p36.11
Allele length
AssemblyAllele length
hg3862512
hg1962512
hg1862512
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv5204513
SamplesNA18507
Known GenesRHD
MethodSequencing
AnalysisCopy number variations are detected using the SOLiD Human CNV Tool. Regions with poor mappability are filtered out from consideration and a log ratio of coverage is used to determine areas of increased copy number. A Hidden Markov Model converts increased coverage into discrete copy number states.
PlatformNot specified
CommentsoriginalFile=Yoruban_cnv.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)esv2451224
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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