A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2438168



Internal ID8155040
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr17:60333901..60337192hg38UCSC Ensembl
Outerchr17:58411262..58414553hg19UCSC Ensembl
Outerchr17:55766044..55769335hg18UCSC Ensembl
Cytoband17q23.2
Allele length
AssemblyAllele length
hg383292
hg193292
hg183292
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv5220247
SamplesNA18507
Known GenesUSP32
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)esv2438168
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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