A curated catalogue of human genomic structural variation




Variant Details

Variant: esv24295



Internal ID11041528
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:151562144..151575782hg38UCSC Ensembl
Innerchr5:150941705..150955343hg19UCSC Ensembl
Innerchr5:150921898..150935536hg18UCSC Ensembl
Cytoband5q33.1
Allele length
AssemblyAllele length
hg3813639
hg1913639
hg1813639
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv18629, esv20633
SamplesNA12414, NA12004, NA18916, NA12287, NA12828, NA12878, NA11894, NA15510, NA19099, NA18523, NA19108, NA18505
Known GenesFAT2
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv24295
Frequency
Sample Size40
Observed Gain12
Observed Loss0
Observed Complex0
Frequencyn/a


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