A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2422965



Internal ID8139837
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr11:12921215..12922792hg38UCSC Ensembl
Outerchr11:12942762..12944339hg19UCSC Ensembl
Outerchr11:12899338..12900915hg18UCSC Ensembl
Cytoband11p15.2
Allele length
AssemblyAllele length
hg381578
hg191578
hg181578
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv5365994
SamplesNA18507
Known GenesTEAD1
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)esv2422965
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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