A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2422541



Internal ID8486099
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr9:115094771..115096386hg38UCSC Ensembl
Outerchr9:117857050..117858665hg19UCSC Ensembl
Outerchr9:116896871..116898486hg18UCSC Ensembl
Cytoband9q33.1
Allele length
AssemblyAllele length
hg381616
hg191616
hg181616
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv5284048
SamplesNA18507
Known GenesTNC
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)esv2422541
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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