Variant Details

Variant: esv2422149

Internal ID

8252597

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr10:122582018..122592081	hg38	UCSC Ensembl
Inner	chr10:124341534..124351597	hg19	UCSC Ensembl
Inner	chr10:124331524..124341587	hg18	UCSC Ensembl

Cytoband

10q26.13

Allele length

Assembly	Allele length
hg38	10064
hg19	10064
hg18	10064

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv5077696, essv5075905, essv5003833, essv5150983, essv5012785, essv5084338, essv5046581, essv5083842, essv5050775, essv5156596, essv5045031, essv5126353, essv5125503, essv5093094, essv5028093, essv5040612, essv5011527, essv5065378, essv5011348, essv5104652, essv5130168, essv5086943, essv5129996, essv5131456, essv5082705, essv5067608, essv5031407, essv5002847, essv5093536, essv5106939, essv5089135, essv5045450, essv5049518, essv5012225, essv5070734, essv5124383, essv5046134, essv5149723, essv5118590, essv5099118, essv5155302, essv5151467, essv5136674, essv5047698, essv5148909, essv5055202, essv5117512, essv5056717, essv5042602, essv5122121, essv5102268, essv5067038, essv5120823, essv5115496, essv5080712, essv5041962, essv5046116, essv5035035, essv5019393, essv5147168, essv5121821, essv5080235, essv5027060, essv5087724, essv5069917, essv5058109, essv5104932, essv5030731, essv5015840, essv5142497, essv5085927, essv5026430, essv5003971, essv5067896, essv5103727, essv5097226, essv5041145, essv5129483, essv5082538, essv5094868, essv5092238, essv5057236, essv5112088, essv5025200, essv5127601, essv5009089, essv5106539, essv5036551, essv5159884, essv5081705, essv5099093, essv5076255, essv5149843, essv5114518, essv5104432, essv5145134, essv5116454, essv5156322, essv5135761, essv5077701, essv5127481, essv5128766, essv5046087, essv5109969, essv5053488, essv5043610, essv5002865, essv5122932, essv5089401, essv5048286, essv5036053, essv5095438, essv5049420, essv5108562, essv5148214, essv5149541, essv5083773, essv5127082, essv5116292, essv5102645, essv5074278, essv5051654, essv5101069, essv5146579, essv5016076, essv5023929, essv5008871, essv5057912, essv5045913, essv5117152, essv5017856, essv5146477, essv5088092, essv5152730, essv5029981, essv5025465, essv5088303, essv5004164, essv5054222, essv5133932, essv5057801, essv5086213, essv5047331, essv5132981, essv5118561, essv5079287, essv5007699, essv5115608, essv5135705, essv5089926, essv5132588, essv5091788, essv5005890

Samples

NA18623, NA21440, NA19065, NA18740, NA19074, NA20898, NA18577, NA19676, NA10865, NA12739, NA20588, NA19394, NA18998, NA12383, NA21097, NA18157, NA17969, NA21111, NA20543, NA21423, NA19794, NA20877, NA20508, NA12843, NA12344, NA20873, NA18603, NA21723, NA21717, NA18124, NA21408, NA18616, NA20517, NA11891, NA18526, NA12400, NA18633, NA20771, NA12399, NA20894, NA18627, NA20846, NA17986, NA20861, NA18995, NA18595, NA12802, NA20900, NA18619, NA20769, NA18105, NA18942, NA20768, NA18161, NA19138, NA19079, NA20910, NA19760, NA18611, NA12761, NA12275, NA21611, NA21109, NA12156, NA20812, NA21454, NA19677, NA18112, NA10850, NA18131, NA12815, NA20889, NA20884, NA19796, NA18557, NA21442, NA21417, NA18640, NA20755, NA18150, NA18638, NA12748, NA20854, NA18951, NA18605, NA17976, NA21313, NA20535, NA18747, NA12760, NA12752, NA18674, NA10863, NA18109, NA18956, NA18694, NA20760, NA19663, NA20875, NA18976, NA18948, NA19097, NA21438, NA10838, NA18981, NA18566, NA21441, NA17979, NA19774, NA21086, NA20859, NA21112, NA11894, NA12056, NA20856, NA12264, NA19059, NA19009, NA18555, NA06985, NA19160, NA20542, NA20534, NA19436, NA18953, NA18978, NA21117, NA18952, NA21144, NA18564, NA20909, NA19144, NA21123, NA20792, NA21390, NA19311, NA17970, NA18643, NA18943, NA21094, NA12347, NA06986, NA18594, NA18631, NA07435, NA20582, NA21102, NA18609, NA17987, NA18149, NA20502, NA21490, NA18955

Known Genes

DMBT1

Method

SNP array

Analysis

To assess copy number variation we merged and analysed the probe level intensity data from both the Affymetrix and Illumina arrays.

Platform

Not specified

Comments

Reference

Altshuler_et_al_2010

Pubmed ID

20811451

Accession Number(s)

esv2422149

Frequency

Sample Size	1184
Observed Gain	0
Observed Loss	153
Observed Complex	0
Frequency	n/a