Variant Details

Variant: esv2422138

Internal ID

8252586

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr9:28047590..28050779	hg38	UCSC Ensembl
Inner	chr9:28047588..28050777	hg19	UCSC Ensembl
Inner	chr9:28037588..28040777	hg18	UCSC Ensembl

Cytoband

9p21.1

Allele length

Assembly	Allele length
hg38	3190
hg19	3190
hg18	3190

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv5067909, essv5136658, essv5015872, essv5095372, essv5136720, essv5011028, essv5143961, essv5124810, essv5114457, essv5083674, essv5120484, essv5106285, essv5083686, essv5141951, essv5023273, essv5026100, essv5074600, essv5049010, essv5026310, essv5107100, essv5152746, essv5080946, essv5046123, essv5111995, essv5032596, essv5158340, essv5108422, essv5020979, essv5126580, essv5122716, essv5127901, essv5029457, essv5062262, essv5154645, essv5095905, essv5093218, essv5028546, essv5046451, essv5094002, essv5101877, essv5047921, essv5024716, essv5156963, essv5078346, essv5003697, essv5140617, essv5028604, essv5008251, essv5090199, essv5013471, essv5053992, essv5022322, essv5102024, essv5022206, essv5024603, essv5078512, essv5154590, essv5127262, essv5005851, essv5112390, essv5012834, essv5003400, essv5061054, essv5023288, essv5101120, essv5050609, essv5047350, essv5124971, essv5050831, essv5082174, essv5015538, essv5089217, essv5003024, essv5050563, essv5020988, essv5155078, essv5138262, essv5016924, essv5123346, essv5073053, essv5142664, essv5017030, essv5094444, essv5005697, essv5004392, essv5105232, essv5096364, essv5142610, essv5057020, essv5043356, essv5059212, essv5077834, essv5032203, essv5151108, essv5090554, essv5015202, essv5054275, essv5066124, essv5070330, essv5047533, essv5092549, essv5084098, essv5016805, essv5051813, essv5128853, essv5115884, essv5075003, essv5006518, essv5014333, essv5060913, essv5002435, essv5069825, essv5160781

Samples

NA20874, NA12842, NA20891, NA21089, NA20766, NA19249, NA19332, NA21436, NA18561, NA19704, NA18641, NA18603, NA19795, NA20294, NA19819, NA21648, NA21115, NA20332, NA21693, NA19098, NA20771, NA20894, NA18969, NA19107, NA19746, NA19381, NA19005, NA10846, NA20756, NA19138, NA20287, NA21391, NA21370, NA19383, NA18977, NA19372, NA19317, NA21107, NA17993, NA12889, NA19159, NA19036, NA19002, NA18520, NA19796, NA12828, NA19445, NA18640, NA18954, NA19921, NA19451, NA18638, NA20129, NA21307, NA20892, NA21313, NA19247, NA19657, NA19070, NA19670, NA19175, NA18109, NA19748, NA18685, NA21617, NA20344, NA19776, NA20903, NA19671, NA19084, NA20881, NA19781, NA19113, NA12817, NA19257, NA12144, NA19095, NA19625, NA18858, NA18945, NA18974, NA20872, NA18632, NA18909, NA18952, NA18559, NA19473, NA19174, NA20520, NA19144, NA18128, NA21123, NA21647, NA20516, NA19193, NA12874, NA18911, NA20357, NA19117, NA19705, NA19060, NA19828, NA17987, NA20786, NA21312, NA19780, NA19711, NA19757, NA19755, NA19139, NA20907, NA21491, NA19074

Known Genes

LINGO2

Method

SNP array

Analysis

To assess copy number variation we merged and analysed the probe level intensity data from both the Affymetrix and Illumina arrays.

Platform

Not specified

Comments

Reference

Altshuler_et_al_2010

Pubmed ID

20811451

Accession Number(s)

esv2422138

Frequency

Sample Size	1184
Observed Gain	0
Observed Loss	113
Observed Complex	0
Frequency	n/a