Variant Details

Variant: esv2411772

Internal ID

7736199

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr11:12380182..12380801	hg38	UCSC Ensembl
Outer	chr11:12379991..12381011	hg38	UCSC Ensembl
Inner	chr11:12401729..12402348	hg19	UCSC Ensembl
Outer	chr11:12401538..12402558	hg19	UCSC Ensembl
Inner	chr11:12358305..12358924	hg18	UCSC Ensembl
Outer	chr11:12358114..12359134	hg18	UCSC Ensembl

Cytoband

11p15.3

Allele length

Assembly	Allele length
hg38	1021
hg19	1021
hg18	1021

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4656436

Samples

NA18507

Known Genes

PARVA

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2411772

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a