Variant Details

Variant: esv2411059

Internal ID

7735486

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr1:212297814..212299275	hg38	UCSC Ensembl
Outer	chr1:212297601..212299477	hg38	UCSC Ensembl
Inner	chr1:212471156..212472617	hg19	UCSC Ensembl
Outer	chr1:212470943..212472819	hg19	UCSC Ensembl
Inner	chr1:210537779..210539240	hg18	UCSC Ensembl
Outer	chr1:210537566..210539442	hg18	UCSC Ensembl

Cytoband

1q32.3

Allele length

Assembly	Allele length
hg38	1877
hg19	1877
hg18	1877

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4528478

Samples

NA18507

Known Genes

PPP2R5A

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2411059

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a