Variant Details

Variant: esv2410554

Internal ID

7734980

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr4:86145089..86145382	hg38	UCSC Ensembl
Outer	chr4:86145013..86145438	hg38	UCSC Ensembl
Inner	chr4:87066242..87066535	hg19	UCSC Ensembl
Outer	chr4:87066166..87066591	hg19	UCSC Ensembl
Inner	chr4:87285266..87285559	hg18	UCSC Ensembl
Outer	chr4:87285190..87285615	hg18	UCSC Ensembl

Cytoband

4q21.3

Allele length

Assembly	Allele length
hg38	426
hg19	426
hg18	426

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

dgv25e194

Supporting Variants

essv4965173

Samples

NA18507

Known Genes

MAPK10

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2410554

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a