Variant Details

Variant: esv2405754

Internal ID

7730181

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr8:19666741..19666876	hg38	UCSC Ensembl
Outer	chr8:19666611..19666960	hg38	UCSC Ensembl
Inner	chr8:19524252..19524387	hg19	UCSC Ensembl
Outer	chr8:19524122..19524471	hg19	UCSC Ensembl
Inner	chr8:19568532..19568667	hg18	UCSC Ensembl
Outer	chr8:19568402..19568751	hg18	UCSC Ensembl

Cytoband

8p21.3

Allele length

Assembly	Allele length
hg38	350
hg19	350
hg18	350

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4862001

Samples

NA18507

Known Genes

CSGALNACT1

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2405754

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a