A curated catalogue of human genomic structural variation




Variant Details

Variant: esv24034



Internal ID11041267
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:86972655..86974063hg38UCSC Ensembl
Innerchr9:89587570..89588978hg19UCSC Ensembl
Innerchr9:88777390..88778798hg18UCSC Ensembl
Cytoband9q21.33
Allele length
AssemblyAllele length
hg381409
hg191409
hg181409
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv10011
SamplesNA11995, NA12006, NA18907
Known GenesLOC100506834
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv24034
Frequency
Sample Size40
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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