Variant Details

Variant: esv2380444

Internal ID

8051556

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr5:90564613..90564929	hg38	UCSC Ensembl
Outer	chr5:90564433..90565124	hg38	UCSC Ensembl
Inner	chr5:89860430..89860746	hg19	UCSC Ensembl
Outer	chr5:89860250..89860941	hg19	UCSC Ensembl
Inner	chr5:89896186..89896502	hg18	UCSC Ensembl
Outer	chr5:89896006..89896697	hg18	UCSC Ensembl

Cytoband

5q14.3

Allele length

Assembly	Allele length
hg38	692
hg19	692
hg18	692

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4825809

Samples

NA18507

Known Genes

GPR98

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2380444

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a