Variant Details

Variant: esv2378584

Internal ID

8049695

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr1:55935621..55935928	hg38	UCSC Ensembl
Outer	chr1:55935426..55936124	hg38	UCSC Ensembl
Inner	chr1:56401294..56401601	hg19	UCSC Ensembl
Outer	chr1:56401099..56401797	hg19	UCSC Ensembl
Inner	chr1:56173882..56174189	hg18	UCSC Ensembl
Outer	chr1:56173687..56174385	hg18	UCSC Ensembl

Cytoband

1p32.2

Allele length

Assembly	Allele length
hg38	699
hg19	699
hg18	699

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4586160

Samples

NA18507

Known Genes

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2378584

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a