Variant Details

Variant: esv2371131

Internal ID

7695556

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr1:151780286..151780313	hg38	UCSC Ensembl
Outer	chr1:151780072..151780513	hg38	UCSC Ensembl
Inner	chr1:151752762..151752789	hg19	UCSC Ensembl
Outer	chr1:151752548..151752989	hg19	UCSC Ensembl
Inner	chr1:150019386..150019413	hg18	UCSC Ensembl
Outer	chr1:150019172..150019613	hg18	UCSC Ensembl

Cytoband

1q21.3

Allele length

Assembly	Allele length
hg38	442
hg19	442
hg18	442

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4766823

Samples

NA18507

Known Genes

TDRKH

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2371131

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a