Variant Details

Variant: esv2369077

Internal ID

8040189

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr10:133111105..133111481	hg38	UCSC Ensembl
Outer	chr10:133111051..133111546	hg38	UCSC Ensembl
Inner	chr10:134924609..134924985	hg19	UCSC Ensembl
Outer	chr10:134924555..134925050	hg19	UCSC Ensembl
Inner	chr10:134774599..134774975	hg18	UCSC Ensembl
Outer	chr10:134774545..134775040	hg18	UCSC Ensembl

Cytoband

10q26.3

Allele length

Assembly	Allele length
hg38	496
hg19	496
hg18	496

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4787285

Samples

NA18507

Known Genes

GPR123

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2369077

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a