Variant Details

Variant: esv2345664

Internal ID

8016775

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr5:175788670..175788760	hg38	UCSC Ensembl
Outer	chr5:175788498..175788927	hg38	UCSC Ensembl
Inner	chr5:175215673..175215763	hg19	UCSC Ensembl
Outer	chr5:175215501..175215930	hg19	UCSC Ensembl
Inner	chr5:175148279..175148369	hg18	UCSC Ensembl
Outer	chr5:175148107..175148536	hg18	UCSC Ensembl

Cytoband

5q35.2

Allele length

Assembly	Allele length
hg38	430
hg19	430
hg18	430

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4969675

Samples

NA18507

Known Genes

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2345664

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a