A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2345037



Internal ID8016148
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:71861743..71862045hg38UCSC Ensembl
Outerchr6:71861535..71862254hg38UCSC Ensembl
Innerchr6:72571446..72571748hg19UCSC Ensembl
Outerchr6:72571238..72571957hg19UCSC Ensembl
Innerchr6:72628167..72628469hg18UCSC Ensembl
Outerchr6:72627959..72628678hg18UCSC Ensembl
Cytoband6q13
Allele length
AssemblyAllele length
hg38720
hg19720
hg18720
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4498052
SamplesNA18507
Known Genes
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv2345037
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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