Variant Details

Variant: esv2338420

Internal ID

7662845

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr21:46189830..46190967	hg38	UCSC Ensembl
Outer	chr21:46189668..46191124	hg38	UCSC Ensembl
Inner	chr21:47609744..47610881	hg19	UCSC Ensembl
Outer	chr21:47609582..47611038	hg19	UCSC Ensembl
Inner	chr21:46434172..46435309	hg18	UCSC Ensembl
Outer	chr21:46434010..46435466	hg18	UCSC Ensembl

Cytoband

21q22.3

Allele length

Assembly	Allele length
hg38	1457
hg19	1457
hg18	1457

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4985762

Samples

NA18507

Known Genes

LSS

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2338420

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a