Variant Details

Variant: esv2334135

Internal ID

7658560

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr4:26885816..26885858	hg38	UCSC Ensembl
Outer	chr4:26885640..26886046	hg38	UCSC Ensembl
Inner	chr4:26887438..26887480	hg19	UCSC Ensembl
Outer	chr4:26887262..26887668	hg19	UCSC Ensembl
Inner	chr4:26496536..26496578	hg18	UCSC Ensembl
Outer	chr4:26496360..26496766	hg18	UCSC Ensembl

Cytoband

4p15.2

Allele length

Assembly	Allele length
hg38	407
hg19	407
hg18	407

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4558487

Samples

NA18507

Known Genes

STIM2

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2334135

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a