Variant Details

Variant: esv2312150

Internal ID

7636575

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr1:168055339..168056498	hg38	UCSC Ensembl
Outer	chr1:168055138..168056688	hg38	UCSC Ensembl
Inner	chr1:168024577..168025736	hg19	UCSC Ensembl
Outer	chr1:168024376..168025926	hg19	UCSC Ensembl
Inner	chr1:166291201..166292360	hg18	UCSC Ensembl
Outer	chr1:166291000..166292550	hg18	UCSC Ensembl

Cytoband

1q24.2

Allele length

Assembly	Allele length
hg38	1551
hg19	1551
hg18	1551

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4561571

Samples

NA18507

Known Genes

DCAF6

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2312150

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a