Variant Details

Variant: esv2307373

Internal ID

7978484

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr6:159245750..159246052	hg38	UCSC Ensembl
Outer	chr6:159245540..159246274	hg38	UCSC Ensembl
Inner	chr6:159666782..159667084	hg19	UCSC Ensembl
Outer	chr6:159666572..159667306	hg19	UCSC Ensembl
Inner	chr6:159586772..159587074	hg18	UCSC Ensembl
Outer	chr6:159586562..159587296	hg18	UCSC Ensembl

Cytoband

6q25.3

Allele length

Assembly	Allele length
hg38	735
hg19	735
hg18	735

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4910502

Samples

NA18507

Known Genes

FNDC1

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2307373

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a