Variant Details

Variant: esv2302217

Internal ID

7973328

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr6:85434589..85434944	hg38	UCSC Ensembl
Outer	chr6:85434454..85435125	hg38	UCSC Ensembl
Inner	chr6:86144307..86144662	hg19	UCSC Ensembl
Outer	chr6:86144172..86144843	hg19	UCSC Ensembl
Inner	chr6:86201026..86201381	hg18	UCSC Ensembl
Outer	chr6:86200891..86201562	hg18	UCSC Ensembl

Cytoband

6q14.3

Allele length

Assembly	Allele length
hg38	672
hg19	672
hg18	672

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4836048

Samples

NA18507

Known Genes

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2302217

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a