Variant Details

Variant: esv2296236

Internal ID

7620661

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr1:56776954..56777273	hg38	UCSC Ensembl
Outer	chr1:56776747..56777498	hg38	UCSC Ensembl
Inner	chr1:57242627..57242946	hg19	UCSC Ensembl
Outer	chr1:57242420..57243171	hg19	UCSC Ensembl
Inner	chr1:57015215..57015534	hg18	UCSC Ensembl
Outer	chr1:57015008..57015759	hg18	UCSC Ensembl

Cytoband

1p32.2

Allele length

Assembly	Allele length
hg38	752
hg19	752
hg18	752

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4802800

Samples

NA18507

Known Genes

C1orf168

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2296236

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a