Variant Details

Variant: esv2293577

Internal ID

7964688

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr4:163580799..163581099	hg38	UCSC Ensembl
Outer	chr4:163580606..163581290	hg38	UCSC Ensembl
Inner	chr4:164501951..164502251	hg19	UCSC Ensembl
Outer	chr4:164501758..164502442	hg19	UCSC Ensembl
Inner	chr4:164721401..164721701	hg18	UCSC Ensembl
Outer	chr4:164721208..164721892	hg18	UCSC Ensembl

Cytoband

4q32.3

Allele length

Assembly	Allele length
hg38	685
hg19	685
hg18	685

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4746308

Samples

NA18507

Known Genes

MARCH1

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2293577

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a