Variant Details

Variant: esv2292861

Internal ID

7617286

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr7:139358358..139358594	hg38	UCSC Ensembl
Outer	chr7:139358279..139358646	hg38	UCSC Ensembl
Inner	chr7:139043104..139043340	hg19	UCSC Ensembl
Outer	chr7:139043025..139043392	hg19	UCSC Ensembl
Inner	chr7:138693644..138693880	hg18	UCSC Ensembl
Outer	chr7:138693565..138693932	hg18	UCSC Ensembl

Cytoband

7q34

Allele length

Assembly	Allele length
hg38	368
hg19	368
hg18	368

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4942720

Samples

NA18507

Known Genes

C7orf55-LUC7L2, LUC7L2

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2292861

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a