Variant Details

Variant: esv2278504

Internal ID

7602929

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr2:226152860..226153088	hg38	UCSC Ensembl
Outer	chr2:226152653..226153298	hg38	UCSC Ensembl
Inner	chr2:227017576..227017804	hg19	UCSC Ensembl
Outer	chr2:227017369..227018014	hg19	UCSC Ensembl
Inner	chr2:226725820..226726048	hg18	UCSC Ensembl
Outer	chr2:226725613..226726258	hg18	UCSC Ensembl

Cytoband

2q36.3

Allele length

Assembly	Allele length
hg38	646
hg19	646
hg18	646

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4752470

Samples

NA18507

Known Genes

LOC646736

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2278504

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a