Variant Details

Variant: esv2273382

Internal ID

7597807

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr13:96695553..96695700	hg38	UCSC Ensembl
Outer	chr13:96695425..96695820	hg38	UCSC Ensembl
Inner	chr13:97347807..97347954	hg19	UCSC Ensembl
Outer	chr13:97347679..97348074	hg19	UCSC Ensembl
Inner	chr13:96145808..96145955	hg18	UCSC Ensembl
Outer	chr13:96145680..96146075	hg18	UCSC Ensembl

Cytoband

13q32.1

Allele length

Assembly	Allele length
hg38	396
hg19	396
hg18	396

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4996300

Samples

NA18507

Known Genes

HS6ST3

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2273382

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a