A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2264885



Internal ID7935996
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:73446443..73446758hg38UCSC Ensembl
Outerchr6:73446254..73446936hg38UCSC Ensembl
Innerchr6:74156166..74156481hg19UCSC Ensembl
Outerchr6:74155977..74156659hg19UCSC Ensembl
Innerchr6:74212887..74213202hg18UCSC Ensembl
Outerchr6:74212698..74213380hg18UCSC Ensembl
Cytoband6q13
Allele length
AssemblyAllele length
hg38683
hg19683
hg18683
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4527205
SamplesNA18507
Known GenesMB21D1
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv2264885
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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