Variant Details

Variant: esv2253218

Internal ID

7577643

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr8:144279081..144279146	hg38	UCSC Ensembl
Outer	chr8:144278897..144279338	hg38	UCSC Ensembl
Inner	chr8:145503114..145503179	hg19	UCSC Ensembl
Outer	chr8:145502930..145503371	hg19	UCSC Ensembl
Inner	chr8:145473922..145473987	hg18	UCSC Ensembl
Outer	chr8:145473738..145474179	hg18	UCSC Ensembl

Cytoband

8q24.3

Allele length

Assembly	Allele length
hg38	442
hg19	442
hg18	442

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4696775

Samples

NA18507

Known Genes

BOP1

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2253218

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a