A curated catalogue of human genomic structural variation




Variant Details

Variant: esv22511



Internal ID11039744
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr2:105768050..105768519hg38UCSC Ensembl
Innerchr2:106384507..106384976hg19UCSC Ensembl
Innerchr2:105750939..105751408hg18UCSC Ensembl
Cytoband2q12.2
Allele length
AssemblyAllele length
hg38470
hg19470
hg18470
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv16817
SamplesNA19129, NA19240
Known GenesNCK2
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv22511
Frequency
Sample Size40
Observed Gain2
Observed Loss0
Observed Complex0
Frequencyn/a


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