Variant Details

Variant: esv2247882

Internal ID

7918993

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr12:10550903..10551208	hg38	UCSC Ensembl
Outer	chr12:10550701..10551397	hg38	UCSC Ensembl
Inner	chr12:10703502..10703807	hg19	UCSC Ensembl
Outer	chr12:10703300..10703996	hg19	UCSC Ensembl
Inner	chr12:10594769..10595074	hg18	UCSC Ensembl
Outer	chr12:10594567..10595263	hg18	UCSC Ensembl

Cytoband

12p13.2

Allele length

Assembly	Allele length
hg38	697
hg19	697
hg18	697

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4682854

Samples

NA18507

Known Genes

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2247882

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a