A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2246828



Internal ID7571253
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:137809846..137809972hg38UCSC Ensembl
Outerchr9:137809660..137810258hg38UCSC Ensembl
Innerchr9:140704298..140704424hg19UCSC Ensembl
Outerchr9:140704112..140704710hg19UCSC Ensembl
Innerchr9:139824119..139824245hg18UCSC Ensembl
Outerchr9:139823933..139824531hg18UCSC Ensembl
Cytoband9q34.3
Allele length
AssemblyAllele length
hg38599
hg19599
hg18599
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4952103
SamplesNA18507
Known GenesEHMT1
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv2246828
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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