A curated catalogue of human genomic structural variation




Variant Details

Variant: esv22393



Internal ID11039626
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr4:56906104..56909418hg38UCSC Ensembl
Innerchr4:57772270..57775584hg19UCSC Ensembl
Innerchr4:57467027..57470341hg18UCSC Ensembl
Cytoband4q12
Allele length
AssemblyAllele length
hg383315
hg193315
hg183315
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv12676
SamplesNA07045, NA12156
Known GenesREST
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv22393
Frequency
Sample Size40
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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