Variant Details

Variant: esv2230097

Internal ID

7901208

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr22:50225616..50225649	hg38	UCSC Ensembl
Outer	chr22:50225419..50225840	hg38	UCSC Ensembl
Inner	chr22:50664045..50664078	hg19	UCSC Ensembl
Outer	chr22:50663848..50664269	hg19	UCSC Ensembl
Inner	chr22:49006172..49006205	hg18	UCSC Ensembl
Outer	chr22:49005975..49006396	hg18	UCSC Ensembl

Cytoband

22q13.33

Allele length

Assembly	Allele length
hg38	422
hg19	422
hg18	422

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4626898

Samples

NA18507

Known Genes

TUBGCP6

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2230097

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a