Variant Details

Variant: esv2225549

Internal ID

7549974

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr4:76027375..76027742	hg38	UCSC Ensembl
Outer	chr4:76027295..76027804	hg38	UCSC Ensembl
Inner	chr4:76948528..76948895	hg19	UCSC Ensembl
Outer	chr4:76948448..76948957	hg19	UCSC Ensembl
Inner	chr4:77167552..77167919	hg18	UCSC Ensembl
Outer	chr4:77167472..77167981	hg18	UCSC Ensembl

Cytoband

4q21.1

Allele length

Assembly	Allele length
hg38	510
hg19	510
hg18	510

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4544006

Samples

NA18507

Known Genes

ART3

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2225549

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a