Variant Details

Variant: esv2218789

Internal ID

7889900

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr2:204713362..204713436	hg38	UCSC Ensembl
Outer	chr2:204713200..204713598	hg38	UCSC Ensembl
Inner	chr2:205578085..205578159	hg19	UCSC Ensembl
Outer	chr2:205577923..205578321	hg19	UCSC Ensembl
Inner	chr2:205286330..205286404	hg18	UCSC Ensembl
Outer	chr2:205286168..205286566	hg18	UCSC Ensembl

Cytoband

2q33.2

Allele length

Assembly	Allele length
hg38	399
hg19	399
hg18	399

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4647424

Samples

NA18507

Known Genes

PARD3B

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2218789

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a