A curated catalogue of human genomic structural variation




Variant Details

Variant: esv22153



Internal ID4353054
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:46912149..46913392hg38UCSC Ensembl
InnerchrX:46771584..46772827hg19UCSC Ensembl
InnerchrX:46656528..46657771hg18UCSC Ensembl
CytobandXp11.23
Allele length
AssemblyAllele length
hg381244
hg191244
hg181244
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv21248
SamplesNA11993
Known GenesJADE3
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv22153
Frequency
Sample Size40
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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