A curated catalogue of human genomic structural variation




Variant Details

Variant: esv22075



Internal ID11039308
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr7:147574356..147588053hg38UCSC Ensembl
Innerchr7:147271448..147285145hg19UCSC Ensembl
Innerchr7:146902381..146916078hg18UCSC Ensembl
Cytoband7q35
Allele length
AssemblyAllele length
hg3813698
hg1913698
hg1813698
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv20953, esv19066
SamplesNA15510, NA11894, NA18858, NA18907, NA12749, NA12156
Known GenesCNTNAP2
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv22075
Frequency
Sample Size40
Observed Gain6
Observed Loss0
Observed Complex0
Frequencyn/a


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