Variant Details

Variant: esv2202829

Internal ID

7873940

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr9:107670577..107670927	hg38	UCSC Ensembl
Outer	chr9:107670422..107671055	hg38	UCSC Ensembl
Inner	chr9:110432858..110433208	hg19	UCSC Ensembl
Outer	chr9:110432703..110433336	hg19	UCSC Ensembl
Inner	chr9:109472679..109473029	hg18	UCSC Ensembl
Outer	chr9:109472524..109473157	hg18	UCSC Ensembl

Cytoband

9q31.2

Allele length

Assembly	Allele length
hg38	634
hg19	634
hg18	634

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4711990

Samples

NA18507

Known Genes

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2202829

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a