Variant Details

Variant: esv2202225

Internal ID

7873336

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr18:55192494..55192601	hg38	UCSC Ensembl
Outer	chr18:55192374..55192733	hg38	UCSC Ensembl
Inner	chr18:52859725..52859832	hg19	UCSC Ensembl
Outer	chr18:52859605..52859964	hg19	UCSC Ensembl
Inner	chr18:51010723..51010830	hg18	UCSC Ensembl
Outer	chr18:51010603..51010962	hg18	UCSC Ensembl

Cytoband

18q21.2

Allele length

Assembly	Allele length
hg38	360
hg19	360
hg18	360

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4910508

Samples

NA18507

Known Genes

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2202225

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a