Variant Details

Variant: esv2200641

Internal ID

7871752

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr5:152076868..152082886	hg38	UCSC Ensembl
Outer	chr5:152076654..152083091	hg38	UCSC Ensembl
Inner	chr5:151456429..151462447	hg19	UCSC Ensembl
Outer	chr5:151456215..151462652	hg19	UCSC Ensembl
Inner	chr5:151436622..151442640	hg18	UCSC Ensembl
Outer	chr5:151436408..151442845	hg18	UCSC Ensembl

Cytoband

5q33.1

Allele length

Assembly	Allele length
hg38	6438
hg19	6438
hg18	6438

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4858452

Samples

NA18507

Known Genes

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2200641

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a