Variant Details

Variant: esv2198169

Internal ID

7522594

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr22:17876674..17877048	hg38	UCSC Ensembl
Outer	chr22:17876571..17877224	hg38	UCSC Ensembl
Inner	chr22:18359440..18359814	hg19	UCSC Ensembl
Outer	chr22:18359337..18359990	hg19	UCSC Ensembl
Inner	chr22:16739440..16739814	hg18	UCSC Ensembl
Outer	chr22:16739337..16739990	hg18	UCSC Ensembl

Cytoband

22q11.21

Allele length

Assembly	Allele length
hg38	654
hg19	654
hg18	654

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

dgv19e194

Supporting Variants

essv4529769

Samples

NA18507

Known Genes

MICAL3

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2198169

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a