A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2196763



Internal ID7521188
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:49861051..49861097hg38UCSC Ensembl
Outerchr15:49860865..49861300hg38UCSC Ensembl
Innerchr15:50153248..50153294hg19UCSC Ensembl
Outerchr15:50153062..50153497hg19UCSC Ensembl
Innerchr15:47940540..47940586hg18UCSC Ensembl
Outerchr15:47940354..47940789hg18UCSC Ensembl
Cytoband15q21.2
Allele length
AssemblyAllele length
hg38436
hg19436
hg18436
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4590106
SamplesNA18507
Known GenesATP8B4
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv2196763
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer